&QMMM $\ldots$ &END

COORDINATES

INPUT

TOPOLOGY

ADD_HYDROGEN

AMBER

ARRAYSIZES ... END ARRAYSIZES

BOX TOLERANCE

BOX WALLS

CAPPING

CAP_HYDROGEN

ELECTROSTATIC COUPLING [LONG RANGE]

ESPWEIGHT

EXCLUSION {GROMOS,LIST}

FLEXIBLE WATER [ALL,BONDTYPE]

GROMOS

HIRSHFELD [ON,OFF]

MAXNN

NOSPLIT

RCUT_NN

RCUT_MIX

RCUT_ESP

RESTART TRAJECTORY [FRAME {num},FILE '{fname}',REVERSE]

SAMPLE INTERACTING [OFF,DCD]

SPLIT

TIMINGS

UPDATE LIST

VERBOSE

WRITE LOCALTEMP [STEP {nfi_lt}]