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The simplest way is to use a link-atom pseudopotential. In the
simplest case, this would be a scaled down pseudopotential with the
required valence change (e.g. ZV=1 when cutting through a single
carbon-carbon bond). However in this case it is required to constrain
the distance between the link atom and the (full-QM) neighbor atom
to the (full-QM) equilibrium distance, to preserve the electronic
structure in the center of the QM subsystem. You should be aware of
the fact, that this is a rather crude approximation and that the
constraint will create a small imbalance in the forces between the QM and
MM subsystems, that can result in a drift in the total energy, if the
length of the constraint is badly chosen.
A more rigorous approach would be to use an optimized pseudopotential
constructed with the method described in ref. [132], that
should take care of the need for the constraint.
Costas Bekas
2008-09-04